PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo15G0021500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 202aa    MW: 22080.3 Da    PI: 9.7693
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo15G0021500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.71e-08119159954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Spipo15G0021500 119 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 159
                      699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-14111169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14114169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-6120159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-6133164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
QMEKFPGFSA ESQPQASFVD FTAVSDESPP SLYDIQTLPA TDPLFGELAA AAMGNPASLY  60
VGGHPHPHPS EGKQASMAAM REMIFRMAAM QPIHIDPESV KPPKRRNVKI SKDPQSVAAR  120
HRRERISERI RILQRLVPGG TKMDTASMLD EAIHYVKFLK TQVQSLERAA ATRAGALVLP  180
STPPASGRAY EAPAQLQQQL PM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282817.11e-62PREDICTED: transcription factor HEC1
SwissprotQ9SND42e-49HEC2_ARATH; Transcription factor HEC2
TrEMBLE0CPU41e-62E0CPU4_VITVI; Putative uncharacterized protein
STRINGVIT_18s0001g10400.t014e-62(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.19e-45bHLH family protein